CBGP Students

 

First Year Students

 

Aaron Albers    

 

e-mail: aalbers@berkeley.edu

 

1st lab rotation: Bertozzi

2nd lab rotation: Chang

3rd lab rotation:

Thesis Advisor:

 

 

 

 

 

Katelyn Connell

 

e-mail: kconnell@berkeley.edu

 

1st lab rotation: Marletta

2nd lab rotation: Marqusee

3rd lab rotation:

Thesis Advisor:

 

 

 

 

 

Aaron Esser-Kahn

 

e-mail: apekay@its.caltech.edu

 

1st lab rotation: Doudna

2nd lab rotation: Francis

3rd lab rotation:

Thesis Advisor:

 

 

 

 

 

Nathaniel Ferhoff

 

e-mail: etanfer@gmail.com

 

1st lab rotation: Marletta

2nd lab rotation: Klinman

3rd lab rotation:

Thesis Advisor:

 

 

 

 

 

Sarah Hubbard

 

e-mail: shubbard@berkeley.edu

 

1st lab rotation: Healy

2nd lab rotation: Bertozzi

3rd lab rotation:

Thesis Advisor:

 

 

 

 

 

Evan Miller

 

e-mail: evanmiller@berkeley.edu

 

1st lab rotation: Francis

2nd lab rotation: Marletta

3rd lab rotation:

Thesis Advisor:

 

 

 

 

 

Rebekah Miller

 

e-mail: rmiller@alum.swarthmore.edu

 

1st lab rotation: Clark

2nd lab rotation: Yang

3rd lab rotation:

Thesis Advisor:

 

 

 

 

 

Melissa Mott

 

e-mail: melissalynnm@berkeley.edu

 

1st lab rotation: Collins

2nd lab rotation: Berger

3rd lab rotation:

Thesis Advisor:

 

 

 

 

 

Sam Shen

 

e-mail: ilaplu@yahoo.com

 

1st lab rotation: Groves

2nd lab rotation: Marqusee

3rd lab rotation:

Thesis Advisor:

 

 

 

 

 

Erlca Wilson

 

e-mail: ewilson@berkeley.edu

 

1st lab rotation: Bertozzi

2nd lab rotation: Trauner

3rd lab rotation:

Thesis Advisor:

 

 

 

 

 

 

Second Year Students

 

Meadow Anderson   

DG-30 Hildebrand

e-mail: lmanders@berkeley.edu

 

1st lab rotation: Marletta

2nd lab rotation: Marqusee

3rd lab rotation: H. Yang

Thesis Advisor: H. Yang

 

 

 

 

 

Ken Dong

 

e-mail: k77dong@yahoo.com

 

1st lab rotation: Klinman

2nd lab rotation: Berger

3rd lab rotation: Cate

Thesis Advisor: Berger

Research topic: Crystal structures of a Topoisomerase 2-DNA complex

 

 

 

 

Jeff Hanson     

DG-30 Hildebrand

e-mail: jeffhansin@hotmail.com

 

1st lab rotation: Cate

2nd lab rotation: Wemmer

3rd lab rotation: H. Yang

Thesis Advisor: H. Yang

 

 

 

 

 

Jessica Harvey

628 Latimer Hall

e-mail: jharvey@berkeley.edu

 

1st lab rotation: Trauner

2nd lab rotation: Marletta

3rd lab rotation: Kramer

Thesis Advisor: Trauner

 

 

 

 

 

Patrick Holder  

739 Latimer Hall

e-mail: holder@berkeley.edu

 

1st lab rotation: Francis

2nd lab rotation: Leary

3rd lab rotation: Bertozzi

Thesis Advisor: Francis

Research topic: Modification of self-assembling proteins for new conducting

biomimetic light-harvesting complexes

 

ÒThe Chemical Biology program was the main reason I came to Berkeley (ok that and the weather). While I found my early research experience fruitful, I only experienced one field within chemistry. On the other hand, this program allowed me to explore and evaluate the variety of personal attitudes, hot topics, and personalities I would not have grasped by walking into a social events and scientific collaborations. I can't praise enough how the program's directors foster a community of exploration and interdisciplinary pursuits. Not to mention they're super cool. Thanks ChemBio!Ó

 

 

 

 

Isaac Miller       

832 Latimer Hall

e-mail: ismiller@berkeley.edu

 

1st lab rotation: Marletta

2nd lab rotation: Francis

3rd lab rotation: Kuriyan

Thesis Advisor: Bertozzi

Research topic: Exploring metabolic oligosaccharide engineering in cancer cells as a tool to overcome immune self-tolerance for tumor immunotherapy

 

ÒChoosing a lab required me to consider how to best match my personality and scientific interests with that of a lab.  Each lab is distinct not only in its research area but in the personalities and approaches of the lab members and professor.  Sampling several labs through rotations made me sure that the lab I picked was my best choice.  Had I not been in the chemical biology program, my choice would have just been my best guess.Ó

 

 

 

 

Dante Romanini        

739 Latimer Hall

e-mail: dante@berkeley.edu

 

1st lab rotation: Thorner

2nd lab rotation: Francis

3rd lab rotation: Keasling

Thesis Advisor: Francis

Research topic: Development of novel reactivity on proteins and self-assembling protein structures through selective bioconjugation

 

 

 

 

 

Jason Rush      

831 Latimer Hall

e-mail: jsrush@berkeley.edu

 

1st lab rotation: Trauner

2nd lab rotation: Keasling

3rd lab rotation: Bertozzi

Thesis Advisor: Bertozzi

 

 

 

 

 

Sandra Villa      

407 Hildebrand Hall

e-mail: chigidem@yahoo.com

 

1st lab rotation: Leary

2nd lab rotation: Mathies

3rd lab rotation: H. Yang

Thesis Advisor: Leary/Keasling

Research topic: Develop methods for profiling metabolites in Shewanella Oneidensis

 

 

 

Matt Volgraf     

837 Latimer Hall

e-mail: volgraf@berkeley.edu

 

 

1st lab rotation: Francis

2nd lab rotation: Trauner

3rd lab rotation: Marletta

Thesis Advisor: Trauner

 

ÒThe Chemical Biology Program was the perfect choice for me.  As an incoming graduate student I knew there were research areas that interested me but that I never had any exposure to in the lab.  With the opportunity to do rotations I was encouraged to try new things and learn skills that I could take with me after the rotations.  At the end of my rotations I felt I had gained a better understanding of what I wanted to do with my graduate work and I could finally make an educated decision on what was right for me.Ó

 

 

 

 

 

 

Third Year Students

 

 

Nicholas Agard

802 Latimer Hall

e-mail: Nicholas_Agard@yahoo.com

 

1st lab rotation: Bertozzi

2nd lab rotation: Francis

3rd lab rotation: Marletta

Thesis Advisor: Bertozzi

Research topic: The Development of Novel Tools for the Elucidation of O-Linked Glycosylation

 

 

 

Matt Banghart

628 Latimer Hall

e-mail: matt_b@berkeley.edu

 

1st lab rotation: Trauner

2nd lab rotation: Kramer

3rd lab rotation: Wemmer

Thesis Advisor: Trauner

Research topic: "New Tools for Chemical Neurobiology: Light-Gated Ion Channels for Photocontrol of Neural Activity" (In collaboration with Professor Richard Kramer - MCB)

 

"The CBGP rotations allowed me to foster and develop inter-departmental collaborations that will serve as the foundation of my thesis research.  In addition, I received training in a number of diverse techniques that I would never have been exposed to in a traditional program."

 

 

 

Jimmy Blair

N514 Genentech, UCSF

e-mail: blairj@berkeley.edu

 

1st lab rotation: Marqusee

2nd lab rotation: Francis

3rd lab rotation: Shokat

Thesis Advisor: Shokat

Research topic: "The Development of Irreversible Inhibitors for

Analog-sensitive Kinases"

 

 

 

Ravi Chandrasekaran

739 Latimer Hall

e-mail: ravic@berkeley.edu

 

1st lab rotation: Francis

2nd lab rotation: Doudna

3rd lab rotation: Bertozzi

Thesis Advisor: Francis/Bertozzi

Research topic: Cell Surface Oligonucleotide Glycoconjugates for the Assembly of Addressible Cellular Arrays

 

ÒI'm so glad that I had the opportunity to participate in CBGP! The program was one of the principal reasons why I chose Berkeley, specifically, because of the opportunity to pick from such a diverse set of labs, coursework designed just for us, and the promise of a small, tight-knit group of graduate students all interested in research at the interface of chemistry and biology. It's all true! Being able to rotate through labs was particularly beneficial because it gave me exposure to various research and lab types, as well as allowed me to gain a valuable skill set that will aid me as I pursue full-time research in a lab. I can't say enough great things about the program, except thanks for such an amazing opportunity!Ó

 

 

 

Josh Gilmore

748 Latimer Hall

e-mail: jgilmore@berkeley.edu

 

1st lab rotation: Keasling

2nd lab rotation: Bertozzi

3rd lab rotation: Francis

Thesis Advisor: Francis

Research topic: ÒSynthesis of small molecule amphiphiles for the coordination of cell surface proteins to supported lipid bilayersÓ

 

 

 

Lisa Green

106/101 Lewis Hall

e-mail: greenl@berkeley.edu

 

1st lab rotation: Tinoco

2nd lab rotation: Marletta

3rd lab rotation: Marqusee

Thesis Advisor: Tinoco

Research topic: Single molecule studies of RNA

 

 

 

Scott Laughlin

805 Latimer Hall

e-mail: slaughli@berkeley.edu

 

1st lab rotation: Ellman

2nd lab rotation: Bertozzi

3rd lab rotation: Francis

Thesis Advisor: Bertozzi

Research topic: ÒUsing small molecule induced reconstitution of glycosyltransferases to reversibly control the polysaccharide architecture at the cell surfaceÓ

 

 

 

Kevin McCusker

124A Lewis Hall

e-mail: kmccusker1@yahoo.com

 

1st lab rotation: Klinman

2nd lab rotation: Cate

3rd lab rotation: Berger

Thesis Advisor: Klinman

Research topic: ÒMechanistic studies of oxygen

activation in bacterial proline hydroxylaseÓ

 

ÒThe CBGP has provided me with many opportunities to explore both the diverse and similar aspects of chemistry and biology.  The first year rotations allowed interactions with other students and faculty knowledgeable in many areas, which greatly aided in both broadening my perspectives as well as focusing my research interests--not to mentioning

sharpening my laboratory techniques.  The program provides great experiences for those of us interested in pursuing multi-disciplinary research.Ó

 

 

 

Carl Mieczkowski

339 Hildebrand Hall

e-mail: carlmax@berkeley.edu

 

1st lab rotation: Leary

2nd lab rotation: Francis

3rd lab rotation: Alber

Thesis Advisor: Alber

Research topic: Various approaches in determining the substrates of eukaryotic-like kinases in Mycobacterium tuberculosis, as well as understanding the structural and biochemical basis behind their substrate specificities.

 

ÒGiven the intense graduate education and experience Berkeley offers in terms of courses, teaching, and research, becoming a part of the Chemical Biology Program and actually experiencing the environment of several laboratories in my first year was absolutely vital for me in making a legitimate decision as to which laboratory would be my home and what kind of research I wished to embark upon during my graduate career.Ó

 

 

 

Douglas Mitchell

205 Lewis Hall

e-mail: douglasm@berkeley.edu

 

1st lab rotation: Bertozzi

2nd lab rotation: Marletta

3rd lab rotation: Cate

Thesis Advisor: Marletta

Research topic: Development of biochemical tools to study S-nitrosation: a redox-sensitive, post-translational modification

 

ÒI think the chemical biology program the Department of Chemistry has initiated here is a really great idea for several reasons. First of all, students in the program do rotations with three labs, 10 weeks a piece, for their first year. Some people do not like this idea because they believe it sets back their PhD work - I have other thoughts on this. We get to sample a lab before making a 5 or 6 year commitment to them. We learn how that particular lab functions: how it is run, what the advisor and other students are like, etc. Also, since we are working on three different projects our first year, we learn about three other areas of science. More than likely, everyone will pick up new techniques our fellow chemistry-only researchers did not have the opportunity to learn about. This gives us a unique perspective. Another reason the chemical biology program is an especially good program is the fact that we are beginning to bridge the gap between chemists and biologists. With a working knowledge in both disciplines, we will have the tools in place to tackle all kinds of very interesting problems the world faces.Ó

 

 

 

Andrew Presley

748 Latimer Hall

e-mail: presley@berkeley.edu

 

1st lab rotation: Francis

2nd lab rotation: Thorner

3rd lab rotation: Marletta

Thesis Advisor: Francis

Research topic: Study of Indium-Mediated Covalent Modification of Structural Proteins

 

ÒI think the rotations have been a great opportunity to get hands-on experience in areas that I had previously only learned about in class, from books, etc.Ó

 

 

 

 

 

 

Fourth Year Students

 

 

Henry Chang

205 Lewis Hall

e-mail: chang88@hotmail.com

 

1st lab rotation: Mathies

2nd lab rotation: Bertozzi

3rd lab rotation:  Marletta

Thesis Advisor: Marletta

Research topic: The transport properties of a histidine-rich protein in the heme detoxification pathway of Plasmodium falciparum

 

ÒI am very glad to be apart of the Chemical Biology Program in the Dept. of Chemistry here at Berkeley.  This program has given me the opportunity to be apart of the forefront in research at the interface between chemistry and biology.  This program brings together many professors with different backgrounds to form an alliance to explore the life sciences as they pertain to human health and disease.  Because of this program, I was given the opportunity to rotate in three different labs before joining one as opposed to having only six weeks to decide as a regular chemistry graduate student.  That is why I decided to explore three completely different areas in chemistry: physical, synthetic, and biological.  Through this experience, I was able to gain a better perspective on what type of chemistry research I wanted to do in graduate school and beyond.  As a result of the program, I am now working on protein biochemistry research studying the most virulent form of human malaria, Plasmodium falciparum.Ó

 

 

 

Neel Joshi

733 Latimer Hall

e-mail: njoshi@berkeley.edu

 

1st lab rotation: Francis

2nd lab rotation: Bertozzi

3rd lab rotation: Marletta

Thesis Advisor: Francis

Research topic: Site Selective Modification of Tyrosine Residues on Protein Surfaces

 

 

 

Christina Shenvi

250 Melvin Calvin Lab

e-mail: clshenvi@berkeley.edu

 

1st lab rotation: Ellman

2nd lab rotation: Handel

3rd lab rotation: Cate

Thesis Advisor: Cate

Research topic: Structural studies of the eukaryotic ribosome with the CrPV internal ribosomal entry sequence (IRES)